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Dushyant Patel LC-MS/MS Method
S.K.P.C.P.E.R., Kherva 28 M .Pharm. Thesis
Profile data type:
¾ In the profile data type, you can see the shape of the peaks in the mass spectrum. Each
atomic mass unit is divided into many sampling intervals. The intensity of the ion current
is determined at each of the sampling intervals. The intensity at each sampling interval is
displayed with the intensities connected by a continuous line. In general, the profile scan
data type is used when you tune and calibrate the mass spectrometer so that you can
easily see and measure mass resolution.
Centroid data type:
¾ In the centroid data type, the mass spectrum is displayed as a bar graph. In this scan data
type, the intensities of each set of multiple sampling intervals are summed. This sum is
displayed versus the integral center of mass of the sampling intervals. In general, the
centroid scan data type is used for data acquisition because the scan speed is faster and
the disk space requirements are smaller. Data processing is also much faster for centroid
data.
4.1.2 TANDEM MASS SPECTROMETRY (MS/MS):
¾ All the mass spectrum tells us is the molecular weight, but it does not provide structure
information for the component of interest. Efforts to remove this limitation took the
form of the development of tandem mass spectrometric methods (MS/MS). Two
stages of mass analysis are required, one to select the precursor ion from other ions
generated in the ion source and one to analyze the product ions after collisions
therefore this approach is called tandem mass spectrometry (MS/MS)
10, 11
. The
schematic of tandem mass spectrometer is presented in Figure 4.4.
¾ In this technique ions are separated, identify and fragmented in a single instrument. A
single molecular ion (precursor) that is characteristic of a given analyte is pass through a
region where they are activated that causes them to fall apart to produce fragment ions
(product). This is usually done by colliding the ions with a neutral gas in a process called
collisional activation or collision-induced dissociation. It is a fast collision event, where
ion translational energy is converted into ion internal energy to obtain an ion in the
excited state, and slow unimolecular decomposition.
¾ The fragment ions are separated accordingly to their mass to charge ratio (m/z). The
resulting MS/MS spectrum consists only of product ions from selected precursor.
MS/MS can be performed in a number of single-stage instruments and a variety of two-
stage instruments. The most versatile and most widely used MS/MS configuration is the
triple quadrupole mass analyzer instrument as compared to other type of mass analyzer.
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